Publications

A canonical list of my peer-reviewed research, annotated with citation impact and links to relevant resources. My name is highlighted in bold.

  1. Y. Shee, A. M. Smaldone, A. Morgunov, G. W. Kyro, V. S. Batista. "FragmentRetro: A Quadratic Retrosynthetic Method Based on Fragmentation Algorithms". arXiv:2509.15409 [cs.AI], 2025.

  2. A. Morgunov, Y. Shee, H. Li, V. S. Batista. "DirectMultiStep: Direct Route Generation for Multi-Step Retrosynthesis". Journal of Chemical Information and Modeling Vol. 65 (8), 3903-3914, 2025.

    *Y.S and A.M contributed equally.

  3. H. Li, Y. Shee, B. Allen, F. Maschietto, A. Morgunov, V. S. Batista. "Kernel-elastic autoencoder for molecular design". PNAS Nexus Vol. 3 (4), pgae168, 2024.

  4. A. Morgunov, G. W. Kyro, R. I. Brent, V. S. Batista. "ChemSpaceAL: An Efficient Active Learning Methodology Applied to Protein-Specific Molecular Generation". Journal of Chemical Information and Modeling Vol. 64 (3), 653-665, 2024.

    *G.W.K, A.M. and R.I.B contributed equally.

  5. A. Morgunov, H. K. Tran, O. R. Meitei, Y.-C. Chien, T. Van Voorhis. "MP2-Based Composite Extrapolation Schemes Can Predict Core-Ionization Energies for First-Row Elements with Coupled-Cluster Level Accuracy". J. Phys. Chem. A Vol. 128 (33), 6989-6998, 2024.

  6. A. Okon, A. Morgunov, J. Yang, Y. D. Petri, H. R. Kilgore, Y. Li, E. R. Strieter, R. T. Raines. "Hydrophilic α-Aryl-α-Diazoamides for Protein Esterification". Synlett, 2025.